Model parameters for simulation of physiological lipids
نویسندگان
چکیده
Coarse grain simulation of proteins in their physiological membrane environment can offer insight across timescales, but requires a comprehensive force field. Parameters are explored for multicomponent bilayers composed of unsaturated lipids DOPC and DOPE, mixed-chain saturation POPC and POPE, and anionic lipids found in bacteria: POPG and cardiolipin. A nonbond representation obtained from multiscale force matching is adapted for these lipids and combined with an improved bonding description of cholesterol. Equilibrating the area per lipid yields robust bilayer simulations and properties for common lipid mixtures with the exception of pure DOPE, which has a known tendency to form nonlamellar phase. The models maintain consistency with an existing lipid-protein interaction model, making the force field of general utility for studying membrane proteins in physiologically representative bilayers.
منابع مشابه
SSM-Wheat: a simulation model for wheat development,growth and yield
A robust crop model can assist in genetic improvement and cultural management of the crop. The objectives of this study were to describe a wheat (Triticum aestivum L.) model and to report results of its evaluation. The model simulates phenological development, leaf development and senescence, crop mass production and partitioning, plant nitrogen balance, yield formation and soil water and ...
متن کاملSimulation of economic damage at mechanized wheat harvesting in Khuzestan province of Iran
Abstract The aim of this research is to present a simulation model for reducing economic damages of mechanized wheat harvesting in the weather conditions of Khuzestan province and similar areas. The simulated model is composed of three sub-models, for determining of the appropriate working hours, grain losses, and economic sub-model. In order to determine the appropriate working hours, a mathem...
متن کاملApplication of SIMETAW simulation model for prediction of climate parameters in different regions of Iran
So far, several models have been proposed for estimating different climate parameters, but due to the lack of valid and long-term data in some meteorological stations, some models have been difficult to use. The SIMETAV V.1.0 model has been developed in cooperation with the University of California Davis and the Water Resources Authority of California in 2005. The SIMETAW model is a new and inn...
متن کاملA Fully Integrated Approach for Better Determination of Fracture Parameters Using Streamline Simulation; A gas condensate reservoir case study in Iran
Many large oil and gas fields in the most productive world regions happen to be fractured. The exploration and development of these reservoirs is a true challenge for many operators. These difficulties are due to uncertainties in geological fracture properties such as aperture, length, connectivity and intensity distribution. To successfully address these challenges, it is paramount to im...
متن کاملApplication of perfect mixing model for simulation of vertical roller mills
Vertical roller mills (VRMs) are well-established grinding equipment for various tasks in the coal and cement industry. There are few studies on simulation of VRMs. In this research work, application of perfect mixing model for simulation of a VRM in a cement grinding plant was investigated. Two sampling surveys were carried out on the VRM circuit. The samples and data from the first survey wer...
متن کامل